I have some canvas Mary Jane type shoes which I use indoors instead of slippers and the velcro seems to have given up on them. I tried the self-adhesive velcro which seems to stick to fingers, the table, everywhere but it didn't stick well enough to the shoes.
It is annoying, I agree, when the shoes have plenty of wear left in them and I never thought of the cobblers, although ours is very expensive.
Mine are not clogged up, but I do know what you mean, I'm always picking the fluff out of the velcro on the DGD'S shoes!